
Grow Where You’re Planted – Testing How New Planting Elevations Affect Jeffrey and Ponderosa Pines
In this article, students will learn about how different planting elevations can affect Jeffrey and ponderosa pines’ survival, growth, and bud development timing.
Grow Where You’re Planted – Testing How New Planting Elevations Affect Jeffrey and Ponderosa Pines
Meet the Scientists

Alejandra Martinez-Berdeja
Plant Ecologist

Jessica Wright
Plant Geneticist

Jill Hamilton
Geneticist
What Kinds of Scientists Did This Research?
Plant Ecologist: This scientist studies the relationship of plants with their living and nonliving environment.
Plant Geneticist: This scientist studies the genetics of trees and plants to understand how genes are related to growth and survival.
Evolutionary Geneticist: This scientist studies how genetic variation leads to evolutionary change.
Thinking About Science

Many scientists study how different plants and animals may react to
climate change. One of the things scientists in this study wanted to
know was how two species of pine trees, Jeffrey pines and ponderosa
pines, might react to a warming climate. To discover how the trees might be affected by warmer conditions, scientists would need to simulate the growing conditions of a possible future climate. How would they do this?
They might be able to grow plants in a greenhouse and control the surrounding temperature and water availability to simulate a warmer climate, but growing pine trees for many decades in a greenhouse would be very difficult!
Instead, the scientists in this study looked at the native range for Jeffrey and ponderosa pines. Jeffrey pines usually grow at higher elevations than ponderosa pines (figure 1). Growing at high elevations means that Jeffrey pines are adapted to cold temperatures and short growing seasons. At lower elevations, to which ponderosa pines are more adapted, temperatures are warmer and the growing season is longer.

Figure 1. In this study area, Jeffrey pines generally grow at higher elevations than ponderosa pines, but they both grow in middle elevations.
FIND Outdoors illustration by Liz Sisk.
These conditions may be like future climate warming conditions. Scientists could use lower—and warmer—elevation planting sites that are still within a plant’s native range as models for future climate change. They could then make predictions about how Jeffrey and ponderosa pines may be impacted by the changing environment by gathering data about how the trees grow in warmer conditions.
Thinking About the Environment

Imagine you found an unusual plant during a walk in the woods, and you
wanted to describe that plant to your teacher to see if they could help
you identify it. What might you tell them? You could describe its size, its color, how many leaves it has, what shape those leaves are, how its leaves or flowers smell, and what its seeds look like. All these traits make up the plant’s phenotype. A phenotype is the set of observable characteristics of an organism.
An organism’s phenotype can be influenced by both its genes and its environment. Genes are the information stored in DNA that tell an organism how to develop. The set of genes that an organism carries is called its genotype. Some traits, like eye color, are determined by an organism’s genotype. Other traits can be caused by the environment; for example, hydrangeas that are pink, purple, or blue get their color from chemicals in the soil rather than from their genes (figure 2).

Figure 2. Hydrangeas react to the pH level and the presence of aluminum ions in the soil. This reaction causes either blue or pink flowers or a shade of purple in between. The blue flowers in this photo come from plants that grow in soil that has aluminum ions and is acidic (low pH). The pink flowers come from plants that grow in soil that is basic (high pH) and doesn’t have available aluminum ions. Gardeners can add chemicals to the soil around each plant to make each plant a different color.
Adobe Stock photo.
In this study, scientists collected seeds with different genotypes of pine trees and planted them in new locations. They then collected information about the trees’ phenotypes, such as how tall and large they grew and when their buds appeared in the spring. By studying how different genotypes were affected by new environments, scientists could learn about how both genotype and environment can impact which trees survived and grew best in new locations.
Introduction
Forest restoration is one of the many important jobs of the Forest Service. Forests can be damaged by different events, like wildfires, invasive insects, disease, or drought. Natural resource professionals then work together to replant trees in these damaged forests. Usually, forest restoration is done with trees that are native to the area to avoid changing the local ecosystem (figure 3).

Figure 3. In addition to planting native species, natural resource professionals may also consider plants’ hardiness zones. This map shows plant hardiness zones based on the average annual minimum winter temperature. Knowing this information helps gardeners and land managers choose plants that will be most likely to survive in their local climates. Jeffrey pines are hardy in zones 5–8, while ponderosa pines are hardy in zones 3–7.
USDA map.
However, one important factor that scientists and land managers must consider is climate change. Scientific evidence points to a warming climate, and scientists are making predictions about what the climate may be like in the future. Trees take a long time to grow, and they can live much longer than some other kinds of plants. Many live for several decades or even centuries!
Over a tree’s lifespan, the local climate may change a lot; temperatures may become warmer, growing seasons may be longer, and water availability may change. Trees can’t get up and move if their local environment becomes too challenging for them to survive; they must either adapt to new conditions or die.
What's the Difference?

Jeffrey pine (Pinus jeffreyi)
USDA Forest Service photo by Kerry Greene.

Ponderosa pine (Pinus ponderosa)
USDA Forest Service photo.
Jeffrey pine (Pinus jeffreyi) | Ponderosa pine (Pinus ponderosa) |
---|---|
Three-needled yellow pine | Three-needled yellow pine |
Found in southwestern Oregon, California, and western Nevada | Found throughout the American West |
Usually grows at high elevations (1,500–2,900 m) in California but can also grow much lower | Usually grows at low to high elevations (150–2,230 m) in California, but can grow higher or lower in other locations |
Life span: 400–500 years, but some can live longer | Life span: 300–600 years |
Height: Up to around 200 feet | Height: Up to around 230 feet |
Adapted to fire and very drought tolerant | Adapted to fire and drought tolerant |
Named after Scottish botanist John Jeffrey, who disappeared in 1854 in the American West | Named for its ponderous, or heavy, wood |
Number Crunch
Reflection Section
Methods
In this study, scientists were able to use data from the work of previous scientists. The previous scientists collected seeds in 1973 from Jeffrey pines growing in three different locations and ponderosa pines growing in four different locations. All the locations were in the Sierra Nevada, a mountain range in California (figure 4).

Figure 4. The Sierra Nevada range lies mostly in California, with a small stretch in western Nevada.
FIND Outdoors map by Leslie Shaw Design.
Scientists made sure to collect seeds from high, middle, and low elevations. These seven collection sites are the seeds’ home sites (figure 5). Then scientists planted the seeds at three different planting sites—one at a high elevation, one at a middle elevation, and one at a low elevation.

Figure 5. These are the seven collection, or home, sites of the Jeffrey and ponderosa pine seeds. Notice that seeds were taken from each tree species at high, middle, and low elevations. Seeds from each species from every home site were then planted at each high, middle, and low elevation planting site. Therefore, some seeds were planted in sites that were similar to their home sites, while some seeds were planted in sites that were far in elevation from their home sites.
FIND Outdoors illustration by Liz Sisk.
During the next 40 years, those scientists and later scientists collected a variety of data. Scientists recorded which trees survived at each location. They also measured the surviving trees’ growth. To determine how much each tree grew, they recorded the diameter at breast height and the overall height of each tree. (Learn more about diameter at breast height below!) They collected these data in three different years: 1982 (after 9 years of growth), 1990 (after 17 years of growth), and 2014 (after 41 years of growth).
Scientists also recorded bud development observations from the trees planted at the low elevation site. They took pictures of the buds on the trees and classified the buds into one of six different stages of development (figure 6). They recorded these data weekly for both Jeffrey and ponderosa pines from mid-April to the end of May in 2014.

Figure 6. Needles grow from the dormant buds on ponderosa and Jeffrey pines. As you can see, the bud is fully closed in stage 1. Gradually the bud opens and new needles grow.
FIND Outdoors illustration by Liz Sisk.
Finally, scientists collected climate data from each of the home sites and each of the new planting sites. Using computer programs, they modeled the mean annual temperature, mean annual precipitation, the days without frost, and how much moisture was available for growing plants in each location. They graphed their data to see the relationship, if any, among these variables and how trees survived and grew in each location.
Reflection Section
What Is Diameter at Breast Height (DBH)?
The diameter of a tree is the length of a line drawn straight through the center of a tree trunk. But where do scientists take this measurement? Trees can have different diameters close to the ground or further up the tree. In this study, scientists measured the diameter at breast height (or DBH). DBH is the standard way that all scientists measure the diameter of big trees.
The diameter at breast height is the diameter of the tree 1.37 meters (or 4.5 feet) above the ground. When a tree is growing on a hill, the DBH is measured on the uphill side of the tree. Scientists can use a special measuring tape that calculates the diameter of the tree.

FIND Outdoors illustration by Stephanie Pfeiffer Rossow.
Findings
Survival Rates
High-elevation Jeffrey pines, adapted to colder temperatures, that were planted in lower elevations had the highest survival rates among Jeffrey pines. The difference in climate from home site to planting site did not seem to affect ponderosa survival rates. For both ponderosa and Jeffrey pines, the highest elevation planting site showed the greatest differences in survival rates.
Growth
Jeffrey pines from low elevation and high elevation had the same heights regardless of where they were planted, but ponderosa pines did have different heights. Ponderosa pines from low elevations grew taller than ponderosa pines from high elevations no matter where they were planted. In other words, this low-elevation genotype has adapted to longer growing seasons and that helps the trees spend more resources on growing.
In contrast, seeds taken from a high-elevation site have adapted to conserve their resources in cold temperatures, so they don’t spend those resources on growth. Those trees tended to grow less no matter where they were planted.

Remember, genotype is the set of genes that an organism carries. Look back at “Thinking About the Environment” to read more about genotype.
Bud Development
Bud development on both ponderosa and Jeffrey pines was only recorded at the low-elevation planting site. At this site, all the buds on the ponderosa pines opened earlier than the buds on the Jeffrey pines. The scientists found a difference among the Jeffrey pines from different elevations. The Jeffrey pines from the low-elevation site transitioned across the bud stages more slowly than the trees from middle and high elevations. The two species appear to have different requirements for bud development.
Reflection Section
Discussion
Ponderosa pines appear more adapted to their home sites and are slower to adapt to their new planting elevations. As the climate warms, scientists and land managers may plant new ponderosa pines at higher elevations within their species range to help the trees survive and thrive.
Jeffrey pines were less likely to survive in climates that were different from their home sites. Whether they survive in warmer future climates may depend on how they withstand temperature and water stress.
Land managers could possibly extend the growing season for Jeffrey pines by planting more Jeffrey pines from high elevations because those trees developed buds earlier than the low-elevation trees. However, when trees adapted to colder conditions are planted in warmer elevations, those trees may struggle to survive in the new climate.
The scientists found many differences in how these two species responded to being planted in new growing sites. More studies like this one of other species of trees will be important for forest restoration efforts in the future as the climate warms.
Reflection Section
Adapted from Martínez-Berdeja, A.; Hamilton, J.A.; Bontemps, A.; Schmitt, J.; Wright, J.W. 2019. Evidence for population differentiation among Jeffrey and ponderosa pines in survival, growth and phenology. Forest Ecology and Management. 434: 40-48.

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Glossary
View All Glossaryannual
(an yə(-wə)l): (1) Covering the period of a year; (2) occurring or happening every year or once a year.
elevation
(e lǝ vā shǝn): The height above sea level.
geneticist
(jǝ ne ti sist): A scientist who studies genetics, which is the science of genes, heredity, and variation of organisms.
genomic tool
((jǝ nō mik tül): A tool used in a branch of biotechnology concerned with the genetic mapping and DNA sequencing of sets of genes or the total genetic make-up of a cell or organism.
ions
(ī änz): Atoms that carry a positive or negative electric charge as a result of having lost or gained one or more electrons.
mean
(meen): The average in a set of numbers.
model
(mä dǝl): (noun): (1) Type or kind; (2) a system of postulates, data, and inferences presented as a mathematical description of an entity or state of affairs.
(verb): To make a simplified copy or representation of something to help aid understanding.
native
(nā tiv): Living or growing naturally in a particular region.
restoration
(res tə rā shən): The act of bringing back to an earlier condition.
simulate
(sim yǝ lāt): To make an imitation (or copy or model) by one system or process of the way in which another system or process works.
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Jill Hamilton
Geneticist
I am interested in understanding how plants, both ones we manage and ones that grow in the wild, adapt to their environments. I use a combination of genomic tools, greenhouses,...View Profile -
Alejandra Martinez-Berdeja
Plant Ecologist
I am interested in studying California annual species that grow in the desert and I enjoy going out to the desert during the spring to see the flowers. I also...View Profile -
Jessica Wright
Plant Geneticist
I am interested in helping forests after wildfires. My research focuses on the choice of seeds to plant into a burned landscape. I also enjoy watching the plants in my...View Profile
Standards addressed in this Article:
Next Generation Science Standards
- ESS2.D-H3Changes in the atmosphere due to human activity have increased carbon dioxide concentrations and thus affect climate.
- ESS2.D-H4Current models predict that, although future regional climate changes will be complex and varied, average global temperatures will continue to rise. The outcomes predicted by global climate models strongly depend on the amounts of human-generated greenhouse gases added to the atmosphere each year and by the ways in which these gases are absorbed by the ocean and biosphere.
- ESS3.D-H2Through computer simulations and other studies, important discoveries are still being made about how the ocean, the atmosphere, and the biosphere interact and are modified in response to human activities.
- ESS3.D-M1Human activities, such as the release of greenhouse gases from burning fossil fuels, are major factors in the current rise in Earth’s mean surface temperature (global warming). Reducing the level of climate change and reducing human vulnerability to whatever climate changes do occur depend on the understanding of climate science, engineering capabilities, and other kinds of knowledge, such as understanding of human behavior, and on applying that knowledge wisely in decisions and activities.
- LS1.B-M4Genetic factors as well as local conditions affect the growth of the adult plant.
- LS1.C-M1Plants, algae (including phytoplankton), and many microorganisms use the energy from light to make sugars (food) from carbon dioxide from the atmosphere and water through the process of photosynthesis, which also releases oxygen. These sugars can be used immediately or stored for growth or later use.
- LS2.A-M1Organisms, and populations of organisms, are dependent on their environmental interactions both with other living things and with nonliving factors.
- LS2.A-M2In any ecosystem, organisms and populations with similar requirements for food, water, oxygen, or other resources may compete with each other for limited resources, access to which consequently constrains their growth and reproduction.
- LS2.A-M3Growth of organisms and population increases are limited by access to resources.
- LS2.C-H1A complex set of interactions within an ecosystem can keep its numbers and types of organisms relatively constant over long periods of time under stable conditions. If a modest biological or physical disturbance to an ecosystem occurs, it may return to its more or less original status (i.e., the ecosystem is resilient), as opposed to becoming a very different ecosystem. Extreme fluctuations in conditions or the size of any population, however, can challenge the functioning of ecosystems in terms of resources and habitat availability.
- LS2.C-M1Ecosystems are dynamic in nature; their characteristics can vary over time. Disruptions to any physical or biological component of an ecosystem can lead to shifts in all its populations.
- LS3.A-M1Genes are located in the chromosomes of cells, with each chromosome pair containing two variants of each of many distinct genes. Each distinct gene chiefly controls the production of specific proteins, which in turn affects the traits of the individual. Changes (mutations) to genes can result in changes to proteins, which can affect the structures and functions of the organism and thereby change traits.
- LS3.B-H2Environmental factors also affect expression of traits, and hence affect the probability of occurrences of traits in a population. Thus, the variation and distribution of traits observed depends on both genetic and environmental factors.
- LS4.B-H2The traits that positively affect survival are more likely to be reproduced, and thus are more common in the population.
- LS4.B-M1Natural selection leads to the predominance of certain traits in a population, and the suppression of others.
- LS4.B-M2In artificial selection, humans have the capacity to influence certain characteristics of organisms by selective breeding. One can choose desired parental traits determined by genes, which are then passed on to offspring.
- LS4.C-H1Evolution is a consequence of the interaction of four factors: (1) the potential for a species to increase in number, (2) the genetic variation of individuals in a species due to mutation and sexual reproduction, (3) competition for an environment’s limited supply of the resources that individuals need in order to survive and reproduce, and (4) the ensuing proliferation of those organisms that are better able to survive and reproduce in that environment.
- LS4.C-H2Natural selection leads to adaptation, that is, to a population dominated by organisms that are anatomically, behaviorally, and physiologically well suited to survive and reproduce in a specific environment. That is, the differential survival and reproduction of organisms in a population that have an advantageous heritable trait leads to an increase in the proportion of individuals in future generations that have the trait and to a decrease in the proportion of individuals that do not.
- LS4.C-H3Adaptation also means that the distribution of traits in a population can change when conditions change.
- LS4.C-H4Changes in the physical environment, whether naturally occurring or human induced, have thus contributed to the expansion of some species, the emergence of new distinct species as populations diverge under different conditions, and the decline–and sometimes the extinction–of some species.
- LS4.C-H5Species become extinct because they can no longer survive and reproduce in their altered environment. If members cannot adjust to change that is too fast or drastic, the opportunity for the species’ evolution is lost.
- LS4.C-M1Adaptation by natural selection acting over generations is one important process by which species change over time in response to changes in environmental conditions. Traits that support successful survival and reproduction in the new environment become more common; those that do not become less common. Thus, the distribution of traits in a population changes.
Social Studies Standards
- People, Places, and Environments
- Science, Technology, and Society
Note To Educators
The Forest Service's Mission
The Forest Service’s mission is to sustain the health, diversity, and productivity of the Nation’s forests and grasslands to meet the needs of present and future generations. For more than 100 years, our motto has been “caring for the land and serving people.” The Forest Service, an agency of the U.S. Department of Agriculture (USDA), recognizes its responsibility to be engaged in efforts to connect youth to nature and to promote the development of science-based conservation education programs and materials nationwide.

What Is the Natural Inquirer?
Natural Inquirer is a science education resource journal to be used by students in grade 6 and up. Natural Inquirer contains articles describing environmental and natural resource research conducted by Forest Service scientists and their cooperators. These scientific journal articles have been reformatted to meet the needs of middle school students. The articles are easy to understand, are aesthetically pleasing to the eye, contain glossaries, and include hands-on activities. The goal of Natural Inquirer is to stimulate critical reading and thinking about scientific inquiry and investigation while teaching about ecology, the natural environment, and natural resources.

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Meet the Scientists
Introduces students to the scientists who did the research. This section may be used in a discussion about careers in science.
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What Kinds of Scientist Did This Research?
Introduces students to the scientific disciplines of the scientists who conducted the research.
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Thinking About Science
Introduces something new about the scientific process, such as a scientific habit of mind or procedures used in scientific studies.
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Thinking About the Environment
Introduces the environmental topic being addressed in the research.
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Introduction
Introduces the problem or question that the research addresses.
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Method
Describes the method the scientists used to collect and analyze their data.
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Findings & Discussion
Describes the results of the analysis. Addresses the findings and places them into the context of the original problem or question.
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Reflection Section
Presents questions aimed at stimulating critical thinking about what has been read or predicting what might be presented in the next section. These questions are placed at the end of each of the main article sections.
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Number Crunches
Presents an easy math problem related to the research.
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Glossary
Defines potentially new scientific or other terms to students. The first occurrence of a glossary word is bold in the text.
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Citation
Gives the original article citation with an internet link to the original article.
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FACTivity
Presents a hands-on activity that emphasizes something presented in the article.
Science Education Standards
You will find a listing of education standards which are addressed by each article at the back of each publication and on our website.
We Welcome Feedback
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Contact
Jessica Nickelsen
Director, Natural Inquirer program -
Email
Education Files
Project Learning Tree
If you are a trained Project Learning Tree educator, you may use “Bursting
Buds,” “How Big Is Your Tree,” and “Signs of Fall” as additional resources.
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Additional Resources
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USDA Information Page on Jeffrey Pine
Visit WebsiteLearn more about the Jeffrey Pine.
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USDA Information Page on Jeffrey Pine
Visit WebsiteLearn more about the Jeffrey Pine.
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USDA Information Page on Ponderosa Pine
Visit WebsiteLearn more about the Ponderosa Pine.
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USDA Forest Service page on native gardening
Visit WebsiteLearn more about the benefits of native gardening.
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USDA Plant Hardiness Zone Map
Visit WebsiteLearn more about the hardiness zones in your area.
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USDA Plants Database
Visit WebsiteLearn more about the native plants in your area.
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Nature’s Notebook, a citizen science project by the USA National Phenology Network
Visit WebsiteTrack changes in the timing of plant and animal seasonal activity with the Nature’s Notebook program.